アミノ酸
生体のタンパク質を構成するアミノ酸はα-アミノ酸(他にβ、γ)で標記には1文字表記と3文字表記の2種類ある。
参照 Wiki
二次構造
α-ヘリックス
β-シート
ランダム

構造チェック

RAPPER http://mordred.bioc.cam.ac.uk/~rapper/

Skolnick lab http://cssb.biology.gatech.edu/skolnick/

Sali lab http://salilab.org/index.html




CHARMM http://www.charmm.org

AMBER http://ambermd.org/




TAP http://protein.cribi.unipd.it/tap/

FRST http://protein.cribi.unipd.it/frst/

ANOLEA http://protein.bio.puc.cl/cardex/servers/anolea/

PROQ http://www.sbc.su.se/~bjornw/ProQ/ProQ.cgi

SIFT http://sift.cchmc.org/

HARMONY http://caps.ncbs.res.in/harmony/



酵素結合部位

VOIDOO http://xray.bmc.uu.se/usf/voidoo.html

PocketPicker http://gecco.org.chemie.uni-frankfurt.de/pocketpicker/download.html

MolMovDB http://www.molmovdb.org/

Evolutionary Trace http://www-cryst.bioc.cam.ac.uk/~jiye/evoltrace/evoltrace.html

JevTrace http://www.cmpharm.ucsf.edu/~marcinj/JEvTrace/
3D templates CSA http://www.ebi.ac.uk/thornton-srv/databases/CSA/

PINTS http://www.russell.embl-heidelberg.de/pints/

Rigor http://xray.bmc.uu.se/
Electrostatic potential APBS http://apbs.sourceforge.net/

DELPHI http://wiki.c2b2.columbia.edu/honiglab_public/index.php/Software:DelPhi

eF-site http://ef-site.hgc.jp/eF-site/index.jsp

WHAT IF pKa http://enzyme.ucd.ie/main/index.php/Software
Hydrogen bond HBPLUS http://www.biochem.ucl.ac.uk/bsm/hbplus/home.html

LIGPLOT http://www.biochem.ucl.ac.uk/bsm/ligplot/ligplot.html

Grid http://www.moldiscovery.com/soft_grid.php

MCSS http://accelrys.com/
Biological Unit PQS http://www.ebi.ac.uk/msd-srv/pqs/

Pita http://www.ebi.ac.uk/thornton-srv/databases/pita/

PISA http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html
Cognate Ligand PROCOGNATE http://www.ebi.ac.uk/thornton-srv/databases/procognate/
Enzyme Mechanism MACiE http://www.ebi.ac.uk/thornton-srv/databases/MACiE/

Last update 2017/08/25